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  5. Solyc03g019960.3.1

Solyc03g019960.3.1


Description : helicase auxiliary factor (CDT1)


Gene families : OG_01_0002838 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002838_tree ,
OG_02_0002106 (LandPlants) Phylogenetic Tree(s): OG_02_0002106_tree ,
OG_03_0001869 (SeedPlants) Phylogenetic Tree(s): OG_03_0001869_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g019960.3.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00169560 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.02 Archaeplastida
AMTR_s00171p00068790 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.22 Archaeplastida
AT2G31270 CDT1, ATCDT1A, CDT1A homolog of yeast CDT1 A 0.05 Archaeplastida
AT3G54710 CDT1B, CDT1, ATCDT1B homolog of yeast CDT1 B homolog of yeast CDT1 B 0.05 Archaeplastida
Cre03.g163300 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.08 Archaeplastida
GSVIVT01024251001 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.13 Archaeplastida
GSVIVT01028303001 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.02 Archaeplastida
Gb_04601 No alias helicase auxiliary factor (CDT1) 0.03 Archaeplastida
Gb_39165 No alias helicase auxiliary factor (CDT1) 0.08 Archaeplastida
LOC_Os04g10650.1 No alias helicase auxiliary factor (CDT1) 0.08 Archaeplastida
LOC_Os10g34820.2 No alias helicase auxiliary factor (CDT1) 0.14 Archaeplastida
MA_114779g0010 No alias helicase auxiliary factor (CDT1) 0.04 Archaeplastida
MA_9011g0010 No alias helicase auxiliary factor (CDT1) 0.11 Archaeplastida
Mp5g09070.1 No alias helicase auxiliary factor (CDT1) 0.03 Archaeplastida
Pp3c18_4420V3.1 No alias homolog of yeast CDT1 B homolog of yeast CDT1 B 0.05 Archaeplastida
Pp3c19_14181V3.1 No alias homolog of yeast CDT1 B homolog of yeast CDT1 B 0.05 Archaeplastida
Pp3c22_17580V3.1 No alias homolog of yeast CDT1 A 0.02 Archaeplastida
Smo403930 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.06 Archaeplastida
Zm00001e004505_P001 No alias helicase auxiliary factor (CDT1) 0.11 Archaeplastida
Zm00001e006735_P001 No alias helicase auxiliary factor (CDT1) 0.04 Archaeplastida
Zm00001e036500_P001 No alias helicase auxiliary factor (CDT1) 0.01 Archaeplastida
Zm00001e041798_P001 No alias helicase auxiliary factor (CDT1) 0.14 Archaeplastida
AMTR_s00009p00169560 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.02 LandPlants
AMTR_s00171p00068790 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.2 LandPlants
AT2G31270 CDT1, ATCDT1A, CDT1A homolog of yeast CDT1 A 0.04 LandPlants
AT3G54710 CDT1B, CDT1, ATCDT1B homolog of yeast CDT1 B homolog of yeast CDT1 B 0.05 LandPlants
GSVIVT01024251001 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.15 LandPlants
GSVIVT01028303001 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.02 LandPlants
Gb_04601 No alias helicase auxiliary factor (CDT1) 0.03 LandPlants
Gb_39165 No alias helicase auxiliary factor (CDT1) 0.06 LandPlants
LOC_Os04g10650.1 No alias helicase auxiliary factor (CDT1) 0.07 LandPlants
LOC_Os10g34820.2 No alias helicase auxiliary factor (CDT1) 0.14 LandPlants
MA_114779g0010 No alias helicase auxiliary factor (CDT1) 0.04 LandPlants
MA_9011g0010 No alias helicase auxiliary factor (CDT1) 0.09 LandPlants
Mp5g09070.1 No alias helicase auxiliary factor (CDT1) 0.03 LandPlants
Pp3c18_4420V3.1 No alias homolog of yeast CDT1 B homolog of yeast CDT1 B 0.05 LandPlants
Pp3c19_14181V3.1 No alias homolog of yeast CDT1 B homolog of yeast CDT1 B 0.05 LandPlants
Smo403930 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.05 LandPlants
Zm00001e004505_P001 No alias helicase auxiliary factor (CDT1) 0.1 LandPlants
Zm00001e006735_P001 No alias helicase auxiliary factor (CDT1) 0.04 LandPlants
Zm00001e036500_P001 No alias helicase auxiliary factor (CDT1) 0.01 LandPlants
Zm00001e041798_P001 No alias helicase auxiliary factor (CDT1) 0.14 LandPlants
AMTR_s00009p00169560 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.02 SeedPlants
AMTR_s00171p00068790 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.18 SeedPlants
AT2G31270 CDT1, ATCDT1A, CDT1A homolog of yeast CDT1 A 0.04 SeedPlants
AT3G54710 CDT1B, CDT1, ATCDT1B homolog of yeast CDT1 B homolog of yeast CDT1 B 0.05 SeedPlants
GSVIVT01024251001 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.14 SeedPlants
GSVIVT01028303001 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.02 SeedPlants
Gb_04601 No alias helicase auxiliary factor (CDT1) 0.03 SeedPlants
Gb_39165 No alias helicase auxiliary factor (CDT1) 0.05 SeedPlants
LOC_Os04g10650.1 No alias helicase auxiliary factor (CDT1) 0.07 SeedPlants
LOC_Os10g34820.2 No alias helicase auxiliary factor (CDT1) 0.13 SeedPlants
MA_114779g0010 No alias helicase auxiliary factor (CDT1) 0.03 SeedPlants
MA_9011g0010 No alias helicase auxiliary factor (CDT1) 0.07 SeedPlants
Zm00001e004505_P001 No alias helicase auxiliary factor (CDT1) 0.09 SeedPlants
Zm00001e006735_P001 No alias helicase auxiliary factor (CDT1) 0.03 SeedPlants
Zm00001e036500_P001 No alias helicase auxiliary factor (CDT1) 0.01 SeedPlants
Zm00001e041798_P001 No alias helicase auxiliary factor (CDT1) 0.14 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR014939 CDT1_Gemini-bd-like 66 158
No external refs found!