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  5. Solyc02g094125.1.1

Solyc02g094125.1.1


Description : Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana (sp|q9fma1|pp433_arath : 340.0)


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000789 (LandPlants) Phylogenetic Tree(s): OG_02_0000789_tree ,
OG_03_0014141 (SeedPlants) Phylogenetic Tree(s): OG_03_0014141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g094125.1.1
Cluster HCCA: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.09 Archaeplastida
AMTR_s00016p00166520 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00024p00191430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01000968001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
GSVIVT01007645001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.04 Archaeplastida
GSVIVT01008015001 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.05 Archaeplastida
GSVIVT01008715001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.11 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
GSVIVT01011455001 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.01 Archaeplastida
GSVIVT01015521001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.07 Archaeplastida
GSVIVT01020016001 No alias Pentatricopeptide repeat-containing protein At1g26900,... 0.12 Archaeplastida
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.06 Archaeplastida
GSVIVT01024912001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
GSVIVT01025295001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.09 Archaeplastida
GSVIVT01026181001 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
GSVIVT01027196001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.04 Archaeplastida
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.07 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01036169001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_27891 No alias RNA editing factor (OTP86) 0.01 Archaeplastida
Gb_29557 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_29874 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Smo107480 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Smo111910 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
Solyc03g051780.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.11 Archaeplastida
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Solyc06g053850.4.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc07g045510.4.1 No alias RNA editing factor (MEF7) 0.17 Archaeplastida
Solyc09g007040.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.06 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
Zm00001e001038_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.09 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.06 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e007597_P001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.09 Archaeplastida
Zm00001e018597_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e023504_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
AMTR_s00002p00243230 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
AT2G36730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
AT3G28640 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 LandPlants
AT4G22760 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
GSVIVT01004902001 No alias Pentatricopeptide repeat-containing protein At4g22760... 0.12 LandPlants
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.13 LandPlants
LOC_Os07g15570.1 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.05 LandPlants
LOC_Os08g06490.2 No alias Pentatricopeptide repeat-containing protein At4g22760... 0.06 LandPlants
LOC_Os09g24520.2 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.1 LandPlants
LOC_Os09g24640.1 No alias Pentatricopeptide repeat-containing protein At2g36730... 0.06 LandPlants
MA_118590g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.11 LandPlants
MA_470679g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.12 LandPlants
Solyc04g063270.2.1 No alias no hits & (original description: none) 0.12 LandPlants
Zm00001e002394_P001 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.03 LandPlants
Zm00001e021453_P001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.08 LandPlants
Zm00001e029450_P001 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.06 LandPlants
Zm00001e031660_P001 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.06 LandPlants
Zm00001e021453_P001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.08 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 295 343
IPR002885 Pentatricopeptide_repeat 194 241
IPR002885 Pentatricopeptide_repeat 436 461
IPR002885 Pentatricopeptide_repeat 95 124
IPR002885 Pentatricopeptide_repeat 369 394
No external refs found!