Solyc02g090240.4.1


Description : Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana (sp|q9sct2|pp277_arath : 639.0)


Gene families : OG_01_0010988 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010988_tree ,
OG_02_0010944 (LandPlants) Phylogenetic Tree(s): OG_02_0010944_tree ,
OG_03_0010904 (SeedPlants) Phylogenetic Tree(s): OG_03_0010904_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g090240.4.1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT3G50420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
LOC_Os04g57670.1 No alias Pentatricopeptide repeat-containing protein At3g50420... 0.08 Archaeplastida
MA_98067g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
AT3G50420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
LOC_Os04g57670.1 No alias Pentatricopeptide repeat-containing protein At3g50420... 0.09 LandPlants
MA_98067g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 LandPlants
AT3G50420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
LOC_Os04g57670.1 No alias Pentatricopeptide repeat-containing protein At3g50420... 0.14 SeedPlants
MA_98067g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 90 138
IPR002885 Pentatricopeptide_repeat 355 402
IPR002885 Pentatricopeptide_repeat 456 504
IPR002885 Pentatricopeptide_repeat 253 299
IPR002885 Pentatricopeptide_repeat 152 200
IPR002885 Pentatricopeptide_repeat 530 552
IPR002885 Pentatricopeptide_repeat 227 252
No external refs found!