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  5. Solyc02g087300.1.1

Solyc02g087300.1.1


Description : scaffolding component Sec13 of coat protein complex


Gene families : OG_01_0002497 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002497_tree ,
OG_02_0002542 (LandPlants) Phylogenetic Tree(s): OG_02_0002542_tree ,
OG_03_0004509 (SeedPlants) Phylogenetic Tree(s): OG_03_0004509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g087300.1.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AT2G30050 No alias transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
AT3G01340 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
LOC_Os03g61630.2 No alias scaffolding component Sec13 of coat protein complex 0.03 Archaeplastida
LOC_Os07g14280.1 No alias scaffolding component Sec13 of coat protein complex 0.03 Archaeplastida
MA_95078g0010 No alias scaffolding component Sec13 of coat protein complex 0.03 Archaeplastida
Mp4g02570.1 No alias scaffolding component Sec13 of coat protein complex 0.04 Archaeplastida
Pp3c19_9370V3.1 No alias transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
Pp3c22_20020V3.1 No alias transducin family protein / WD-40 repeat family protein 0.04 Archaeplastida
Zm00001e016458_P001 No alias scaffolding component Sec13 of coat protein complex 0.03 Archaeplastida
Zm00001e033208_P004 No alias no hits & (original description: none) 0.07 Archaeplastida
AT2G30050 No alias transducin family protein / WD-40 repeat family protein 0.03 LandPlants
AT3G01340 No alias Transducin/WD40 repeat-like superfamily protein 0.03 LandPlants
LOC_Os03g61630.2 No alias scaffolding component Sec13 of coat protein complex 0.03 LandPlants
LOC_Os07g14280.1 No alias scaffolding component Sec13 of coat protein complex 0.03 LandPlants
MA_95078g0010 No alias scaffolding component Sec13 of coat protein complex 0.03 LandPlants
Mp4g02570.1 No alias scaffolding component Sec13 of coat protein complex 0.04 LandPlants
Pp3c19_9370V3.1 No alias transducin family protein / WD-40 repeat family protein 0.03 LandPlants
Pp3c22_20020V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 LandPlants
Zm00001e033208_P004 No alias no hits & (original description: none) 0.07 LandPlants
AT2G30050 No alias transducin family protein / WD-40 repeat family protein 0.03 SeedPlants
AT3G01340 No alias Transducin/WD40 repeat-like superfamily protein 0.03 SeedPlants
MA_95078g0010 No alias scaffolding component Sec13 of coat protein complex 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 207 241
IPR001680 WD40_repeat 96 131
IPR001680 WD40_repeat 145 192
IPR001680 WD40_repeat 47 86
IPR001680 WD40_repeat 8 37
IPR001680 WD40_repeat 260 287
No external refs found!