Solyc02g069270.2.1


Description : siRNA-binding factor (AGO2) of non-canonical RdDM pathway


Gene families : OG_01_0000124 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000124_tree ,
OG_02_0002747 (LandPlants) Phylogenetic Tree(s): OG_02_0002747_tree ,
OG_03_0002302 (SeedPlants) Phylogenetic Tree(s): OG_03_0002302_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g069270.2.1
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AT1G69440 AGO7, ZIP Argonaute family protein 0.06 Archaeplastida
GSVIVT01012490001 No alias Protein argonaute 7 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01015464001 No alias Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
Gb_34642 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida
LOC_Os07g09020.1 No alias Protein argonaute 14 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_594g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c17_16550V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Archaeplastida
Pp3c18_9600V3.1 No alias Argonaute family protein 0.01 Archaeplastida
Zm00001e002044_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041452_P004 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR014811 ArgoL1 305 350
IPR032472 ArgoL2 518 543
IPR003100 PAZ_dom 362 480
IPR003165 Piwi 649 939
IPR032474 Argonaute_N 178 295
No external refs found!