AT1G64550 (GCN3, ATGCN3)

Aliases : GCN3, ATGCN3

Description : general control non-repressible 3

Gene families : OG_01_0001462 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001462_tree ,
OG_02_0008230 (LandPlants) Phylogenetic Tree(s): OG_02_0008230_tree ,
OG_03_0010656 (SeedPlants) Phylogenetic Tree(s): OG_03_0010656_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G64550
Cluster	HCCA: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000383.51	No alias	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cpa\|evm.model.tig00020629.98	No alias	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.04	Archaeplastida
Cre01.g023787	No alias	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.05	Archaeplastida
Cre11.g478128	No alias	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01019609001	No alias	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.05	Archaeplastida
LOC_Os02g58020.1	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.04	Archaeplastida
MA_8312073g0010	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.03	Archaeplastida
Mp7g18200.1	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.11	Archaeplastida
Pp3c2_12550V3.1	No alias	ABC transporter family protein	0.02	Archaeplastida
Pp3c3_23080V3.1	No alias	general control non-repressible 3	0.08	Archaeplastida
Smo175495	No alias	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.03	Archaeplastida
Zm00001e016263_P001	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e017809_P001	No alias	ABC transporter F family member 1 OS=Arabidopsis...	0.03	Archaeplastida
GSVIVT01019609001	No alias	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.04	LandPlants
LOC_Os02g58020.1	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.03	LandPlants
MA_8312073g0010	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.03	LandPlants
Mp7g18200.1	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.09	LandPlants
Pp3c3_23080V3.1	No alias	general control non-repressible 3	0.06	LandPlants
Smo175495	No alias	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.02	LandPlants
Zm00001e016263_P001	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.04	LandPlants
AMTR_s00009p00263550	evm_27.TU.AmTr_v1...	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.02	SeedPlants
GSVIVT01019609001	No alias	ABC transporter F family member 3 OS=Arabidopsis thaliana	0.04	SeedPlants
LOC_Os02g58020.1	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.03	SeedPlants
MA_8312073g0010	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.03	SeedPlants
Zm00001e016263_P001	No alias	ABC transporter F family member 3 OS=Arabidopsis...	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006096	glycolytic process	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006165	nucleoside diphosphate phosphorylation	None	Extended
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006757	ATP generation from ADP	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009132	nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009135	purine nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009185	ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0017038	protein import	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042742	defense response to bacterium	IMP	Interproscan
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046031	ADP metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0046939	nucleotide phosphorylation	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	521	651
IPR003439	ABC_transporter-like	194	368
IPR032781	ABC_tran_Xtn	407	488

External Links

No external refs found!

AT1G64550 (GCN3, ATGCN3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation