Solyc02g014870.4.1

Description : protein factor U5-15kDa/YLS8 of U5 small nuclear ribonucleoprotein particle (snRNP)

Gene families : OG_01_0003341 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003341_tree ,
OG_02_0003829 (LandPlants) Phylogenetic Tree(s): OG_02_0003829_tree ,
OG_03_0004047 (SeedPlants) Phylogenetic Tree(s): OG_03_0004047_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g014870.4.1
Cluster	HCCA: Cluster_272

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00063040	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	Archaeplastida
Mp2g16100.1	No alias	protein factor U5-15kDa/YLS8 of U5 small nuclear...	0.02	Archaeplastida
Mp2g16100.1	No alias	protein factor U5-15kDa/YLS8 of U5 small nuclear...	0.02	LandPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0097526	spliceosomal tri-snRNP complex	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004123	Dim1	4	136

External Links

No external refs found!

Solyc02g014870.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation