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  5. Solyc01g108140.4.1

Solyc01g108140.4.1


Description : transcription factor (REM)


Gene families : OG_01_0000741 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000741_tree ,
OG_02_0001199 (LandPlants) Phylogenetic Tree(s): OG_02_0001199_tree ,
OG_03_0001296 (SeedPlants) Phylogenetic Tree(s): OG_03_0001296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g108140.4.1
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AT1G49480 RTV1 related to vernalization1 1 0.05 Archaeplastida
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
GSVIVT01022143001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Gb_35990 No alias transcription factor (REM) 0.04 Archaeplastida
LOC_Os03g08620.1 No alias transcription factor (REM) 0.05 Archaeplastida
MA_10433064g0010 No alias transcription factor (REM) 0.03 Archaeplastida
MA_59943g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g08790.1 No alias transcription factor (REM) 0.03 Archaeplastida
Pp3c14_21500V3.1 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
Pp3c17_16170V3.1 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
Pp3c1_15410V3.1 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
Zm00001e000624_P003 No alias transcription factor (REM) 0.05 Archaeplastida
Zm00001e020584_P001 No alias transcription factor (REM) 0.05 Archaeplastida
Zm00001e038852_P001 No alias transcription factor (REM) 0.02 Archaeplastida
Zm00001e040028_P004 No alias transcription factor (REM) 0.09 Archaeplastida
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.02 LandPlants
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.02 LandPlants
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 LandPlants
Gb_35990 No alias transcription factor (REM) 0.04 LandPlants
LOC_Os03g08620.1 No alias transcription factor (REM) 0.03 LandPlants
MA_10433064g0010 No alias transcription factor (REM) 0.02 LandPlants
MA_59943g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp2g08790.1 No alias transcription factor (REM) 0.03 LandPlants
Zm00001e000624_P003 No alias transcription factor (REM) 0.04 LandPlants
Zm00001e020584_P001 No alias transcription factor (REM) 0.04 LandPlants
Zm00001e038852_P001 No alias transcription factor (REM) 0.02 LandPlants
Zm00001e040028_P004 No alias transcription factor (REM) 0.09 LandPlants
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.02 SeedPlants
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 SeedPlants
Gb_35990 No alias transcription factor (REM) 0.04 SeedPlants
LOC_Os03g08620.1 No alias transcription factor (REM) 0.03 SeedPlants
MA_10433064g0010 No alias transcription factor (REM) 0.02 SeedPlants
MA_59943g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e000624_P003 No alias transcription factor (REM) 0.04 SeedPlants
Zm00001e020584_P001 No alias transcription factor (REM) 0.04 SeedPlants
Zm00001e038852_P001 No alias transcription factor (REM) 0.02 SeedPlants
Zm00001e040028_P004 No alias transcription factor (REM) 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 129 218
No external refs found!