Solyc01g107320.3.1


Description : plastidial mRNA processing factor (PPR10)


Gene families : OG_01_0002673 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002673_tree ,
OG_02_0001952 (LandPlants) Phylogenetic Tree(s): OG_02_0001952_tree ,
OG_03_0001479 (SeedPlants) Phylogenetic Tree(s): OG_03_0001479_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g107320.3.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 Archaeplastida
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.06 Archaeplastida
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.06 Archaeplastida
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 LandPlants
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 LandPlants
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.04 LandPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.05 LandPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 SeedPlants
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.04 SeedPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.05 SeedPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 303 361
IPR002885 Pentatricopeptide_repeat 621 676
IPR002885 Pentatricopeptide_repeat 196 258
IPR002885 Pentatricopeptide_repeat 373 434
IPR002885 Pentatricopeptide_repeat 442 501
IPR002885 Pentatricopeptide_repeat 524 573
IPR002885 Pentatricopeptide_repeat 699 745
IPR002885 Pentatricopeptide_repeat 765 794
No external refs found!