AT1G62930

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0005757 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005757_tree ,
OG_02_0003900 (LandPlants) Phylogenetic Tree(s): OG_02_0003900_tree ,
OG_03_0002486 (SeedPlants) Phylogenetic Tree(s): OG_03_0002486_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G62930
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G62670	RPF2	rna processing factor 2	0.02	LandPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IMP	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	389	422
IPR002885	Pentatricopeptide_repeat	496	523
IPR002885	Pentatricopeptide_repeat	183	232
IPR002885	Pentatricopeptide_repeat	429	477
IPR002885	Pentatricopeptide_repeat	323	371
IPR002885	Pentatricopeptide_repeat	254	302
IPR002885	Pentatricopeptide_repeat	533	579
IPR002885	Pentatricopeptide_repeat	115	162

External Links

No external refs found!