AT1G62670 (RPF2)


Aliases : RPF2

Description : rna processing factor 2


Gene families : OG_01_0005757 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005757_tree ,
OG_02_0003900 (LandPlants) Phylogenetic Tree(s): OG_02_0003900_tree ,
OG_03_0002486 (SeedPlants) Phylogenetic Tree(s): OG_03_0002486_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G62670
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
AT1G62590 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Archaeplastida
AT1G63400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT4G26800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G62590 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 LandPlants
AT1G62930 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT1G63400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
AT4G26800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT1G62590 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 SeedPlants
AT1G63400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
AT4G26800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IMP Interproscan
MF GO:0003723 RNA binding IDA Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 184 233
IPR002885 Pentatricopeptide_repeat 464 513
IPR002885 Pentatricopeptide_repeat 324 372
IPR002885 Pentatricopeptide_repeat 254 303
IPR002885 Pentatricopeptide_repeat 394 441
IPR002885 Pentatricopeptide_repeat 534 580
IPR002885 Pentatricopeptide_repeat 80 128
IPR002885 Pentatricopeptide_repeat 146 177
No external refs found!