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  5. Solyc01g103090.4.1

Solyc01g103090.4.1


Description : splicing factor (RGH3)


Gene families : OG_01_0007012 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007012_tree ,
OG_02_0005443 (LandPlants) Phylogenetic Tree(s): OG_02_0005443_tree ,
OG_03_0006518 (SeedPlants) Phylogenetic Tree(s): OG_03_0006518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g103090.4.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00102890 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 5... 0.03 Archaeplastida
GSVIVT01023150001 No alias Zinc finger CCCH domain-containing protein 5... 0.07 Archaeplastida
LOC_Os02g35150.1 No alias splicing factor (RGH3) 0.06 Archaeplastida
MA_118860g0010 No alias Zinc finger CCCH domain-containing protein 16 OS=Oryza... 0.03 Archaeplastida
Mp8g15710.1 No alias splicing factor (RGH3) 0.04 Archaeplastida
Pp3c3_25240V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 Archaeplastida
Zm00001e014831_P001 No alias splicing factor (RGH3) 0.1 Archaeplastida
AMTR_s00099p00102890 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 5... 0.02 LandPlants
AT1G10320 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 LandPlants
GSVIVT01023150001 No alias Zinc finger CCCH domain-containing protein 5... 0.06 LandPlants
LOC_Os02g35150.1 No alias splicing factor (RGH3) 0.06 LandPlants
MA_118860g0010 No alias Zinc finger CCCH domain-containing protein 16 OS=Oryza... 0.03 LandPlants
Mp8g15710.1 No alias splicing factor (RGH3) 0.03 LandPlants
Pp3c3_25240V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 LandPlants
Zm00001e014831_P001 No alias splicing factor (RGH3) 0.1 LandPlants
AT1G10320 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 SeedPlants
GSVIVT01023150001 No alias Zinc finger CCCH domain-containing protein 5... 0.06 SeedPlants
LOC_Os02g35150.1 No alias splicing factor (RGH3) 0.06 SeedPlants
MA_10234528g0010 No alias no hits & (original description: none) 0.01 SeedPlants
MA_118860g0010 No alias Zinc finger CCCH domain-containing protein 16 OS=Oryza... 0.03 SeedPlants
Zm00001e014831_P001 No alias splicing factor (RGH3) 0.09 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 364 391
IPR000571 Znf_CCCH 234 254
IPR000504 RRM_dom 298 354
No external refs found!