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  5. Solyc01g095810.3.1

Solyc01g095810.3.1


Description : RING-H2-class E3 ligase


Gene families : OG_01_0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0107344 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_03_0085045 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g095810.3.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00044p00211560 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00049p00223430 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00056p00122930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00102p00069840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AT1G67856 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G72200 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G35910 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G42350 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G42360 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G11370 RHA1A RING-H2 finger A1A 0.03 Archaeplastida
AT4G15975 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G10380 ATRING1, RING1 RING/U-box superfamily protein 0.04 Archaeplastida
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.03 Archaeplastida
AT5G42200 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT5G43420 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G53110 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01022306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01027524001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
Gb_00010 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_02533 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_04644 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_04645 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_05381 No alias RHA2 signal transducer of abscisic acid perception 0.03 Archaeplastida
Gb_05385 No alias RHA2 signal transducer of abscisic acid perception 0.03 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Gb_14788 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_20461 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_23066 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_26582 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_32878 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_33184 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_41385 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g11460.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g16120.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g20910.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g33720.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g58540.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g05570.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
LOC_Os05g29676.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os06g07100.2 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os06g16060.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os06g34620.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os08g06090.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g37760.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os10g30310.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os10g39936.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os12g42530.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_101154g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10431161g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_1115518g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_117647g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_122471g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_167410g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_211g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_222729g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_227897g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_25345g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_26001g0020 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_377006g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_391931g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_465316g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_479316g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_569551g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_61738g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_96368g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Pp3c1_32230V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c22_17730V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c24_7770V3.1 No alias hypoxia-responsive family protein / zinc finger... 0.02 Archaeplastida
Smo441685 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo74486 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g100100.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g083460.3.1 No alias RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc03g112340.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc11g007530.2.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007103_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e011901_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e014764_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e015495_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e016470_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e016474_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e031439_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030247 polysaccharide binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 250 292
IPR025287 WAK_GUB 32 96
No external refs found!