Solyc01g090650.1.1

Description : chromatin remodeling factor (Alc)

Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0008796 (LandPlants) Phylogenetic Tree(s): OG_02_0008796_tree ,
OG_03_0009569 (SeedPlants) Phylogenetic Tree(s): OG_03_0009569_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g090650.1.1
Cluster	HCCA: Cluster_65

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00063470	evm_27.TU.AmTr_v1...	Chromatin organisation.DNA methylation.RNA-independent...	0.02	Archaeplastida
Cpa\|evm.model.tig00020848.66	No alias	Probable helicase CHR10 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01035901001	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
LOC_Os06g08480.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
LOC_Os07g46590.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	Archaeplastida
MA_104034g0010	No alias	chromatin remodeling factor (DDM1)	0.03	Archaeplastida
MA_10427682g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.02	Archaeplastida
Pp3c18_19045V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Archaeplastida
Pp3c27_3890V3.1	No alias	Homeotic gene regulator	0.03	Archaeplastida
Zm00001e005517_P002	No alias	chromatin remodeling factor (DDM1)	0.03	Archaeplastida
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	363	483
IPR000330	SNF2_dom	57	342

External Links

No external refs found!