1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g088750.3.1

Solyc01g088750.3.1


Description : Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana (sp|p0c7r4|pp110_arath : 753.0)


Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0001470 (LandPlants) Phylogenetic Tree(s): OG_02_0001470_tree ,
OG_03_0007371 (SeedPlants) Phylogenetic Tree(s): OG_03_0007371_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g088750.3.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 Archaeplastida
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
AMTR_s00110p00138300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g69290... 0.02 Archaeplastida
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G17616 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.05 Archaeplastida
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 Archaeplastida
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.04 Archaeplastida
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.07 Archaeplastida
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.06 Archaeplastida
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.04 Archaeplastida
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
AMTR_s00002p00179800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g17616... 0.02 LandPlants
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 LandPlants
AMTR_s00110p00138300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g69290... 0.02 LandPlants
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.05 LandPlants
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 LandPlants
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.04 LandPlants
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.06 LandPlants
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.06 LandPlants
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 LandPlants
AMTR_s00110p00138300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g69290... 0.02 SeedPlants
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 SeedPlants
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.05 SeedPlants
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.06 SeedPlants
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 417 461
IPR002885 Pentatricopeptide_repeat 504 545
IPR002885 Pentatricopeptide_repeat 366 388
No external refs found!