Solyc01g088670.3.1


Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana (sp|q9fix3|pp407_arath : 199.0)


Gene families : OG_01_0015417 (Archaeplastida) Phylogenetic Tree(s): OG_01_0015417_tree ,
OG_02_0013831 (LandPlants) Phylogenetic Tree(s): OG_02_0013831_tree ,
OG_03_0003834 (SeedPlants) Phylogenetic Tree(s): OG_03_0003834_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g088670.3.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00150300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.05 Archaeplastida
AMTR_s00002p00150300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.03 LandPlants
AMTR_s00002p00150300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.05 SeedPlants
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 19 43
IPR002885 Pentatricopeptide_repeat 119 148
IPR002885 Pentatricopeptide_repeat 46 90
IPR002885 Pentatricopeptide_repeat 290 339
IPR002885 Pentatricopeptide_repeat 150 198
IPR002885 Pentatricopeptide_repeat 220 269
No external refs found!