Solyc01g079690.4.1


Description : chromatin remodeling factor (Snf2)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0001935 (LandPlants) Phylogenetic Tree(s): OG_02_0001935_tree ,
OG_03_0002288 (SeedPlants) Phylogenetic Tree(s): OG_03_0002288_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g079690.4.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00173840 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.06 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.03 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.03 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.04 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.03 Archaeplastida
AT5G18620 CHR17 chromatin remodeling factor17 0.03 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.03 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.07 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.04 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.03 Archaeplastida
Pp3c20_11500V3.1 No alias chromatin remodeling 5 0.05 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.03 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.02 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.04 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.04 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 LandPlants
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.02 LandPlants
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 LandPlants
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.02 LandPlants
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0042393 histone binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR029295 SnAC 804 880
IPR001650 Helicase_C 611 724
IPR000330 SNF2_dom 317 592
No external refs found!