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  5. Solyc01g079530.4.1

Solyc01g079530.4.1


Description : RING-v-class E3 ligase


Gene families : OG_01_0000436 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000436_tree ,
OG_02_0009096 (LandPlants) Phylogenetic Tree(s): OG_02_0009096_tree ,
OG_03_0007079 (SeedPlants) Phylogenetic Tree(s): OG_03_0007079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g079530.4.1
Cluster HCCA: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
AT1G02610 No alias RING/FYVE/PHD zinc finger superfamily protein 0.07 Archaeplastida
GSVIVT01011789001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.09 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.04 Archaeplastida
LOC_Os01g49280.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Mp8g15410.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Solyc01g020190.2.1 No alias Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis... 0.04 Archaeplastida
Solyc05g008390.3.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Solyc06g069780.4.1 No alias RING-v-class E3 ligase 0.06 Archaeplastida
AT1G02610 No alias RING/FYVE/PHD zinc finger superfamily protein 0.07 LandPlants
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.09 LandPlants
AT1G02610 No alias RING/FYVE/PHD zinc finger superfamily protein 0.07 SeedPlants
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 SeedPlants
LOC_Os05g28730.1 No alias RING-v-class E3 ligase 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 21 68
IPR022143 DUF3675 74 199
No external refs found!