Solyc01g057200.4.1


Description : Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana (sp|q9squ6|pp216_arath : 561.0)


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0001965 (LandPlants) Phylogenetic Tree(s): OG_02_0001965_tree ,
OG_03_0010885 (SeedPlants) Phylogenetic Tree(s): OG_03_0010885_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g057200.4.1
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00075400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
AT3G27750 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.04 Archaeplastida
AT3G46870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 Archaeplastida
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.08 Archaeplastida
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 Archaeplastida
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.07 Archaeplastida
Gb_18843 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.04 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.06 Archaeplastida
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.02 Archaeplastida
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
LOC_Os04g39970.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 Archaeplastida
Mp1g15120.1 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.05 Archaeplastida
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 Archaeplastida
Zm00001e010524_P001 No alias THA8 plastidial RNA splicing factor 0.01 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.09 Archaeplastida
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
AMTR_s00045p00075400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g06430,... 0.03 LandPlants
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 LandPlants
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.06 LandPlants
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 LandPlants
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.08 LandPlants
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 LandPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 LandPlants
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 LandPlants
MA_10431478g0010 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.01 LandPlants
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 LandPlants
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 LandPlants
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 LandPlants
AMTR_s00045p00075400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g06430,... 0.03 SeedPlants
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.06 SeedPlants
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.01 SeedPlants
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 368 431
IPR002885 Pentatricopeptide_repeat 135 164
IPR002885 Pentatricopeptide_repeat 243 267
IPR002885 Pentatricopeptide_repeat 273 321
IPR002885 Pentatricopeptide_repeat 171 215
No external refs found!