AT1G57820 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : Zinc finger (C3HC4-type RING finger) family protein


Gene families : OG_01_0002340 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002340_tree ,
OG_02_0002708 (LandPlants) Phylogenetic Tree(s): OG_02_0002708_tree ,
OG_03_0002795 (SeedPlants) Phylogenetic Tree(s): OG_03_0002795_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G57820
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
MA_10432100g0020 No alias E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c10_16970V3.1 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 Archaeplastida
MA_10432100g0020 No alias E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.02 LandPlants
MA_10432100g0020 No alias E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
BP GO:0000280 nuclear division RCA Interproscan
BP GO:0000724 double-strand break repair via homologous recombination RCA Interproscan
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003682 chromatin binding IDA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006261 DNA-dependent DNA replication RCA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006325 chromatin organization IPI Interproscan
BP GO:0006342 chromatin silencing RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated ISS Interproscan
BP GO:0007000 nucleolus organization RCA Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
MF GO:0008327 methyl-CpG binding IDA Interproscan
BP GO:0009555 pollen development RCA Interproscan
CC GO:0010369 chromocenter IDA Interproscan
MF GO:0010385 double-stranded methylated DNA binding IDA Interproscan
BP GO:0010424 DNA methylation on cytosine within a CG sequence IMP Interproscan
MF GO:0010428 methyl-CpNpG binding IDA Interproscan
MF GO:0010429 methyl-CpNpN binding IDA Interproscan
BP GO:0016444 somatic cell DNA recombination RCA Interproscan
BP GO:0016567 protein ubiquitination IDA Interproscan
BP GO:0016572 histone phosphorylation RCA Interproscan
BP GO:0031047 gene silencing by RNA RCA Interproscan
BP GO:0031508 pericentric heterochromatin assembly IMP Interproscan
BP GO:0032776 DNA methylation on cytosine IMP Interproscan
MF GO:0042393 histone binding IPI Interproscan
BP GO:0051301 cell division IDA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
BP GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003105 SRA_YDG 276 425
IPR027370 Znf-RING_LisH 518 572
No external refs found!