1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G55890

AT1G55890


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000198 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000198_tree ,
OG_02_0000086 (LandPlants) Phylogenetic Tree(s): OG_02_0000086_tree ,
OG_03_0000415 (SeedPlants) Phylogenetic Tree(s): OG_03_0000415_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55890
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
MA_130339g0010 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.01 Archaeplastida
Solyc02g079830.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.06 Archaeplastida
Solyc03g031460.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.15 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.09 Archaeplastida
GSVIVT01005273001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 LandPlants
MA_130339g0010 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.01 LandPlants
Solyc02g079830.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.06 LandPlants
Solyc03g031460.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.14 LandPlants
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.09 LandPlants
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.03 SeedPlants
AMTR_s00029p00106010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
GSVIVT01005273001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 SeedPlants
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 SeedPlants
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.01 SeedPlants
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
Solyc02g079830.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.04 SeedPlants
Solyc03g031460.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.11 SeedPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.07 SeedPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.04 SeedPlants
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.08 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 115 140
IPR002885 Pentatricopeptide_repeat 146 170
IPR002885 Pentatricopeptide_repeat 178 222
IPR002885 Pentatricopeptide_repeat 283 332
No external refs found!