Cre07.g322176


Description : 27.2 RNA.transcription Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). nuclear RNA polymerase A2 (NRPA2)


Gene families : OG_01_0006623 (Gene family) Phylogenetic Tree(s): OG0006623_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Cre07.g322176
Cluster HCCA cluster: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT1G29940 NRPA2 nuclear RNA polymerase A2 0.1 Gene family
Cpa|evm.model.tig00021348.38 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.16 Gene family
GSVIVT01036642001 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.07 Gene family
LOC_Os10g35290 Os10g0495600 27.2 RNA.transcription Encodes a subunit of RNA... 0.12 Gene family
MA_10434720g0010 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.03 Gene family
Smo405033 PACid_15410045 No description available 0.1 Gene family
Solyc01g086710.3.1 Solyc01g086710.3 27.2 RNA.transcription Encodes a subunit of RNA... 0.13 Gene family
Zm00001d032587 GRMZM2G388892 27.2 RNA.transcription Encodes a subunit of RNA... 0.13 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan
BP GO:0006351 transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007641 RNA_pol_Rpb2_7 933 1045
IPR007644 RNA_pol_bsu_protrusion 42 429
IPR009674 Rpa2_dom_4 594 670
IPR007120 DNA-dir_RNAP_su2_dom 761 930
IPR007642 RNA_pol_Rpb2_2 229 397
IPR007645 RNA_pol_Rpb2_3 481 545
No external refs found!