AT1G54500

Description : Rubredoxin-like superfamily protein

Gene families : OG_01_0006628 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006628_tree ,
OG_02_0008310 (LandPlants) Phylogenetic Tree(s): OG_02_0008310_tree ,
OG_03_0010591 (SeedPlants) Phylogenetic Tree(s): OG_03_0010591_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G54500
Cluster	HCCA: Cluster_142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00123650	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem...	0.06	Archaeplastida
Cpa\|evm.model.tig00020912.23	No alias	Photosynthesis.photophosphorylation.photosystem...	0.02	Archaeplastida
Cre07.g315150	No alias	Photosynthesis.photophosphorylation.photosystem...	0.04	Archaeplastida
Gb_24370	No alias	RBD1 protein involved in PS-II assembly	0.05	Archaeplastida
LOC_Os08g23410.1	No alias	RBD1 protein involved in PS-II assembly	0.12	Archaeplastida
MA_158671g0010	No alias	RBD1 protein involved in PS-II assembly	0.06	Archaeplastida
Mp5g13990.1	No alias	RBD1 protein involved in PS-II assembly	0.04	Archaeplastida
Pp3c1_22450V3.1	No alias	Rubredoxin-like superfamily protein	0.08	Archaeplastida
Solyc01g097910.2.1	No alias	RBD1 protein involved in PS-II assembly	0.11	Archaeplastida
Zm00001e006086_P001	No alias	RBD1 protein involved in PS-II assembly	0.07	Archaeplastida
AMTR_s00045p00123650	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem...	0.05	LandPlants
Gb_24370	No alias	RBD1 protein involved in PS-II assembly	0.05	LandPlants
LOC_Os08g23410.1	No alias	RBD1 protein involved in PS-II assembly	0.1	LandPlants
MA_158671g0010	No alias	RBD1 protein involved in PS-II assembly	0.05	LandPlants
Mp5g13990.1	No alias	RBD1 protein involved in PS-II assembly	0.04	LandPlants
Pp3c1_22450V3.1	No alias	Rubredoxin-like superfamily protein	0.07	LandPlants
Pp3c2_13970V3.1	No alias	Rubredoxin-like superfamily protein	0.01	LandPlants
Solyc01g097910.2.1	No alias	RBD1 protein involved in PS-II assembly	0.09	LandPlants
Zm00001e006086_P001	No alias	RBD1 protein involved in PS-II assembly	0.08	LandPlants
AMTR_s00045p00123650	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem...	0.05	SeedPlants
Gb_24370	No alias	RBD1 protein involved in PS-II assembly	0.05	SeedPlants
LOC_Os08g23410.1	No alias	RBD1 protein involved in PS-II assembly	0.1	SeedPlants
MA_158671g0010	No alias	RBD1 protein involved in PS-II assembly	0.05	SeedPlants
Solyc01g097910.2.1	No alias	RBD1 protein involved in PS-II assembly	0.09	SeedPlants
Zm00001e006086_P001	No alias	RBD1 protein involved in PS-II assembly	0.07	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009773	photosynthetic electron transport in photosystem I	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	ISS	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR024935	Rubredoxin_dom	100	145

External Links

No external refs found!

AT1G54500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation