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  5. AMTR_s00008p00202090

AMTR_s00008p00202090 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00008.120

Description : RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000043 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000043_tree ,
OG_02_0011363 (LandPlants) Phylogenetic Tree(s): OG_02_0011363_tree ,
OG_03_0011389 (SeedPlants) Phylogenetic Tree(s): OG_03_0011389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00008p00202090
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.09 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.06 Archaeplastida
AT5G50250 CP31B chloroplast RNA-binding protein 31B 0.02 Archaeplastida
Cpa|evm.model.tig00000944.16 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre01.g032300 No alias No description available 0.01 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01022600001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.02 Archaeplastida
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.08 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.07 Archaeplastida
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.02 Archaeplastida
Gb_37522 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.05 Archaeplastida
Gb_39591 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.03 Archaeplastida
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os07g06450.1 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.07 Archaeplastida
MA_185349g0010 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.04 Archaeplastida
MA_367032g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_717958g0010 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.01 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
Pp3c17_4050V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.03 Archaeplastida
Solyc01g006940.4.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.1 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.09 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.06 Archaeplastida
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.07 Archaeplastida
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.06 Archaeplastida
Zm00001e010844_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.03 Archaeplastida
Zm00001e032835_P001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.02 Archaeplastida
Zm00001e035630_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
AT2G35410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 LandPlants
GSVIVT01013146001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.04 LandPlants
LOC_Os04g50110.1 No alias no hits & (original description: none) 0.05 LandPlants
Solyc08g076840.3.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 LandPlants
Zm00001e007101_P002 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 LandPlants
AT2G35410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 SeedPlants
GSVIVT01013146001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 SeedPlants
LOC_Os04g50110.1 No alias no hits & (original description: none) 0.05 SeedPlants
Solyc08g076840.3.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 SeedPlants
Zm00001e007101_P002 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 91 160
IPR000504 RRM_dom 192 262
No external refs found!