AT1G49590


Description : C2H2 and C2HC zinc fingers superfamily protein


Gene families : OG_01_0007451 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007451_tree ,
OG_02_0008459 (LandPlants) Phylogenetic Tree(s): OG_02_0008459_tree ,
OG_03_0009504 (SeedPlants) Phylogenetic Tree(s): OG_03_0009504_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G49590
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g11170.1 No alias Zinc finger protein ZOP1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g11170.1 No alias Zinc finger protein ZOP1 OS=Arabidopsis thaliana... 0.03 LandPlants
LOC_Os06g11170.1 No alias Zinc finger protein ZOP1 OS=Arabidopsis thaliana... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IDA Interproscan
MF GO:0003725 double-stranded RNA binding IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008380 RNA splicing IMP Interproscan
CC GO:0015030 Cajal body IDA Interproscan
BP GO:0080188 gene silencing by RNA-directed DNA methylation IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013085 U1-CZ_Znf_C2H2 11 41
No external refs found!