Nbi_g43610


Description : beta-type-5 component *(PBE) of 26S proteasome & original description: none


Gene families : OG0004761 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004761_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g43610
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00083100 evm_27.TU.AmTr_v1... Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder output from all 47 species
AT1G13060 PBE1 20S proteasome beta subunit E1 0.08 OrthoFinder output from all 47 species
Adi_g022653 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aev_g09083 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Ala_g01174 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Aob_g07705 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aop_g00419 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Ceric.28G031800.1 Ceric.28G031800 beta-type-5 component *(PBE) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.44 No alias Protein degradation.26S proteasome.20S core... 0.07 OrthoFinder output from all 47 species
Cre10.g461950 No alias Protein degradation.26S proteasome.20S core... 0.12 OrthoFinder output from all 47 species
Dcu_g03476 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
GSVIVT01010375001 No alias Protein degradation.26S proteasome.20S core... 0.06 OrthoFinder output from all 47 species
Gb_01835 No alias component beta type-5 of 26S proteasome 0.06 OrthoFinder output from all 47 species
LOC_Os06g06030.1 LOC_Os06g06030 component beta type-5 of 26S proteasome 0.1 OrthoFinder output from all 47 species
Len_g05178 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
MA_2177g0010 PBE1 component beta type-5 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Mp2g06230.1 No alias component beta type-5 of 26S proteasome 0.09 OrthoFinder output from all 47 species
Msp_g07676 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Ore_g04318 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Sam_g14103 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Solyc05g056160.3.1 Solyc05g056160 component beta type-5 of 26S proteasome 0.1 OrthoFinder output from all 47 species
Spa_g02376 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Spa_g05432 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Tin_g02565 No alias beta-type-5 component *(PBE) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Zm00001e036472_P001 Zm00001e036472 component beta type-5 of 26S proteasome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 127 307
No external refs found!