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  5. Nbi_g43343

Nbi_g43343 (PBF1)


Aliases : PBF1

Description : beta-type-6 component *(PBF) of 26S proteasome & original description: none


Gene families : OG0004349 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0004349_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g43343
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
Als_g08527 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 39 species
Aop_g00288 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 39 species
Azfi_s0392.g067771 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 39 species
Cba_g12445 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.01 OrthoFinder output from all 39 species
Cba_g31823 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.01 OrthoFinder output from all 39 species
Dac_g02574 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 39 species
Dde_g01948 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 39 species
Len_g10197 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 39 species
Msp_g43692 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.07 OrthoFinder output from all 39 species
Pir_g12796 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 39 species
Sacu_v1.1_s0001.g000342 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 39 species
Sam_g09893 No alias beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 39 species
Spa_g16539 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 39 species
Tin_g30516 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005761 mitochondrial ribosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 64 259
No external refs found!