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  5. Nbi_g42102

Nbi_g42102


Description : Trihelix-type transcription factor & original description: none


Gene families : OG0001890 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001890_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g42102

Target Alias Description ECC score Gene Family Method Actions
AT5G01380 No alias Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g15411 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10269 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10408 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47784 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02477 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g009895 No alias Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0020.g015350 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.35G046600.1 Ceric.35G046600 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g19503 No alias Trihelix-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g19765 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011168001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
Gb_20046 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Gb_22614 No alias transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
LOC_Os02g47370.1 LOC_Os02g47370 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
LOC_Os05g03740.1 LOC_Os05g03740 transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
Lfl_g12494 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_10436704g0010 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Msp_g31197 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.09 OrthoFinder output from all 47 species
Ore_g30407 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45245 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31822 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06854 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc09g005560.4.1 Solyc09g005560 transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Spa_g03613 No alias Trihelix-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g51759 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51760 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 82 163
No external refs found!