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  5. Nbi_g41800

Nbi_g41800


Description : SMARCI component *(BRD) of SWI/SNF chromatin remodeling complex & original description: none


Gene families : OG0001292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g41800
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00165320 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT5G55040 No alias DNA-binding bromodomain-containing protein 0.03 OrthoFinder output from all 47 species
Ala_g08601 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g08054 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g57133 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Als_g61893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72686.t1 Aspi01Gene72686 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cba_g66228 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ceric.15G032800.1 Ceric.15G032800 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.06 OrthoFinder output from all 47 species
Ceric.29G070400.1 Ceric.29G070400 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.150 No alias No description available 0.01 OrthoFinder output from all 47 species
Gb_27356 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g03870.1 LOC_Os03g03870 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g19175 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.07 OrthoFinder output from all 47 species
Lfl_g05033 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Mp3g15890.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g34665 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g60712 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ppi_g11339 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ppi_g41680 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Sam_g26218 No alias transcriptional repressor *(AITR) & original description: none 0.06 OrthoFinder output from all 47 species
Solyc07g064700.4.1 Solyc07g064700 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e038927_P001 Zm00001e038927 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 441 522
No external refs found!