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  5. Nbi_g40990

Nbi_g40990 (ATARFA1F, ARFA1F)


Aliases : ATARFA1F, ARFA1F

Description : ARF-GTPase *(ARF1) & original description: none


Gene families : OG0000301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g40990

Target Alias Description ECC score Gene Family Method Actions
AT3G62290 ARFA1E, ATARFA1E ADP-ribosylation factor A1E 0.02 OrthoFinder output from all 47 species
Adi_g024167 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098666 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21909 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07699 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08438 ARFA1E, ATARFA1E not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38491 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g38870 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g14443 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02408 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene16875.t1 ATARFA1F,... ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene22465.t1 ATARFB1B,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31560 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g49446 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g68389 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40902 ATARFA1F, ARFA1F not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05453 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17402 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g26837 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01017654001 ATARFA1F, ARFA1F Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
Gb_07323 ARFA1E, ATARFA1E ARF-GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os01g59790.2 ATARFA1F,... ARF-GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os07g12200.1 ARF1A1C, LOC_Os07g12200 ARF-GTPase 0.03 OrthoFinder output from all 47 species
Len_g03591 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g07320.1 ATARFB1C, ARFB1C ARF-GTPase 0.02 OrthoFinder output from all 47 species
Ore_g06306 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Smo140818 ATARFA1B, ARFA1B Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder output from all 47 species
Spa_g16801 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49718 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013545_P001 ATARFB1B,... ARF-GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 40 212
No external refs found!