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  5. Nbi_g38796

Nbi_g38796


Description : RNA editing factor *(MEF14) & original description: none


Gene families : OG0003511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g38796
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00159040 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT1G12850 No alias Phosphoglycerate mutase family protein 0.02 OrthoFinder output from all 47 species
AT3G26780 No alias Phosphoglycerate mutase family protein 0.03 OrthoFinder output from all 47 species
Ceric.04G013600.1 Ceric.04G013600 RNA editing factor *(MEF14) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01033003001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_05421 No alias RNA editing factor (MEF14) 0.06 OrthoFinder output from all 47 species
Len_g13638 No alias RNA editing factor *(MEF14) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09051 No alias RNA editing factor *(MEF14) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g23392 No alias RNA editing factor *(MEF14) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g24073 No alias RNA editing factor *(MEF14) & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022011 No alias RNA editing factor *(MEF14) & original description: CDS=51-1046 0.03 OrthoFinder output from all 47 species
Spa_g02519 No alias RNA editing factor *(MEF14) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g29807 No alias RNA editing factor *(MEF14) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g52169 No alias RNA editing factor *(MEF14) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05889 No alias RNA ediTing factor *(MEF14) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g06356 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07456 No alias RNA ediTing factor *(MEF14) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e021512_P002 Zm00001e021512 RNA editing factor (MEF14) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016032 viral process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019072 viral genome packaging IEP HCCA
BP GO:0019073 viral DNA genome packaging IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013078 His_Pase_superF_clade-1 150 287
IPR013078 His_Pase_superF_clade-1 379 440
No external refs found!