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  5. Nbi_g38400

Nbi_g38400 (CRR22)


Aliases : CRR22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g38400

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00174700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00155p00018120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.1 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aob_g20395 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g06648 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0529.g075791 No alias protein involved in PS-I assembly *(PYG7) & original... 0.02 OrthoFinder output from all 47 species
Cba_g19052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g23385 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G061800.1 Ceric.07G061800 not classified & original description: pacid=50627604... 0.08 OrthoFinder output from all 47 species
Ceric.29G070600.1 Ceric.29G070600 not classified & original description: pacid=50625806... 0.05 OrthoFinder output from all 47 species
Dde_g22180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22598 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01036207001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
LOC_Os04g02850.1 OTP84, LOC_Os04g02850 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.02 OrthoFinder output from all 47 species
Lfl_g07246 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07796 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_81514g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Msp_g17741 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34152 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10372 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g12909 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g13293 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16142 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16479 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13533 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g58489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56752 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001030 No alias not classified & original description: CDS=1-1857 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004484 No alias not classified & original description: CDS=1-2304 0.05 OrthoFinder output from all 47 species
Solyc01g098150.3.1 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
Solyc02g081900.4.1 OTP84, Solyc02g081900 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Spa_g14002 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g26548 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26827 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g29657 No alias ssDNA-binding protein *(OSB) & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g30016 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g05629 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g06092 OTP86 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 83 110
IPR002885 Pentatricopeptide_repeat 522 549
IPR002885 Pentatricopeptide_repeat 447 494
IPR002885 Pentatricopeptide_repeat 346 392
IPR002885 Pentatricopeptide_repeat 142 188
IPR002885 Pentatricopeptide_repeat 243 290
No external refs found!