Smo233015

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIa basal transcription factor complex.small subunit

Gene families : OG_01_0005057 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005057_tree ,
OG_02_0005082 (LandPlants) Phylogenetic Tree(s): OG_02_0005082_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo233015
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
Cre10.g424150	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.01	Archaeplastida
Gb_30266	No alias	small subunit of TFIIa basal transcription factor complex	0.02	Archaeplastida
LOC_Os05g01710.1	No alias	small subunit of TFIIa basal transcription factor complex	0.02	Archaeplastida
Gb_30266	No alias	small subunit of TFIIa basal transcription factor complex	0.02	LandPlants
LOC_Os05g01710.1	No alias	small subunit of TFIIa basal transcription factor complex	0.02	LandPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	None	Extended
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR015871	TFIIA_gsu_C	58	101

External Links

No external refs found!

Smo233015

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation