ATCG00180 (RPOC1)


Aliases : RPOC1

Description : DNA-directed RNA polymerase family protein


Gene families : OG_01_0003439 (Gene family) Phylogenetic Tree(s): OG0003439_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): ATCG00180
Cluster HCCA cluster: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Solyc01g017370.1.1 Solyc01g017370.1 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.05 Gene family
Solyc01g017390.2.1 Solyc01g017390.2 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.07 Gene family
Solyc01g017470.2.1 Solyc01g017470.2 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.05 Gene family
Solyc07g021220.2.1 Solyc07g021220.2 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.16 Gene family
Solyc08g014390.1.1 Solyc08g014390.1 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.09 Gene family
Solyc08g028950.2.1 Solyc08g028950.2 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family
Solyc10g031560.1.1 Solyc10g031560.1 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.13 Gene family
Solyc12g062570.2.1 Solyc12g062570.2 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.05 Gene family
Solyc12g062580.1.1 Solyc12g062580.1 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity TAS Arabidopsis.org
BP GO:0006091 generation of precursor metabolites and energy RCA Arabidopsis.org
BP GO:0006354 DNA-templated transcription, elongation RCA Arabidopsis.org
BP GO:0006354 DNA-templated transcription, elongation TAS Arabidopsis.org
CC GO:0009295 nucleoid IDA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
CC GO:0009507 chloroplast TAS Arabidopsis.org
BP GO:0015979 photosynthesis RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 430 513
IPR000722 RNA_pol_asu 373 421
IPR007080 RNA_pol_Rpb1_1 8 371
No external refs found!