ATCG00170 (RPOC2)


Aliases : RPOC2

Description : DNA-directed RNA polymerase family protein


Gene families : OG_01_0001467 (Gene family) Phylogenetic Tree(s): OG0001467_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): ATCG00170
Cluster HCCA cluster: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017094001 No alias 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.1 Gene family
GSVIVT01019173001 No alias 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.03 Gene family
GSVIVT01032753001 No alias 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.08 Gene family
GSVIVT01034287001 No alias 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family
LOC_Os04g16830 No alias 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.17 Gene family
Solyc01g016520.1.1 Solyc01g016520.1 No description available 0.05 Gene family
Solyc01g017510.1.1 Solyc01g017510.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family
Solyc04g049730.1.1 Solyc04g049730.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.06 Gene family
Solyc05g020010.1.1 Solyc05g020010.1 1.1.2.2 PS.lightreaction.photosystem I.PSI polypeptide... 0.12 Gene family
Solyc06g074600.1.1 Solyc06g074600.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family
Solyc08g028910.1.1 Solyc08g028910.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.08 Gene family
Solyc08g028920.2.1 Solyc08g028920.2 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.04 Gene family
Solyc10g031550.1.1 Solyc10g031550.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family
Solyc11g007260.1.1 Solyc11g007260.1 No description available 0.18 Gene family
Solyc12g036010.1.1 Solyc12g036010.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.04 Gene family
Solyc12g096910.1.1 Solyc12g096910.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity TAS Arabidopsis.org
BP GO:0006091 generation of precursor metabolites and energy RCA Arabidopsis.org
BP GO:0006354 DNA-templated transcription, elongation RCA Arabidopsis.org
BP GO:0006354 DNA-templated transcription, elongation TAS Arabidopsis.org
CC GO:0009295 nucleoid IDA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
CC GO:0009507 chloroplast TAS Arabidopsis.org
CC GO:0009570 chloroplast stroma IDA Arabidopsis.org
BP GO:0015979 photosynthesis RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 1188 1275
IPR007081 RNA_pol_Rpb1_5 172 367
IPR007083 RNA_pol_Rpb1_4 95 157
No external refs found!