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  5. Cpa|evm.model.tig00000217.24

Cpa|evm.model.tig00000217.24


Description : 28.1 DNA.synthesis/chromatin structure Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. SPLAYED (SYD)


Gene families : OG_01_0001399 (Gene family) Phylogenetic Tree(s): OG0001399_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR network (cutoff 100): Cpa|evm.model.tig00000217.24
Cluster HCCA cluster: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT1G76380 No alias DNA-binding bromodomain-containing protein 0.01 Gene family
LOC_Os03g03870 Os03g0130800 27.3.42 RNA.regulation of transcription.Bromodomain... 0.01 Gene family
Zm00001d021609 GRMZM2G044044 35.2 not assigned.unknown DNA-binding... 0.01 Gene family
Zm00001d027506 GRMZM2G020548 27.3.42 RNA.regulation of transcription.Bromodomain... 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001487 Bromodomain 277 349
No external refs found!