AT5G62000 (HSS, ARF1-BP, ARF2, ORE14)


Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : auxin response factor 2


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G62000
Cluster HCCA cluster: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01004942001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
GSVIVT01032251001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
LOC_Os01g70270 Os01g0927600 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
LOC_Os04g43910 Os04g0519700 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
LOC_Os05g48870 Os05g0563400 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
Smo424114 PACid_15422082 No description available 0.03 Gene family
Zm00001d011953 GRMZM2G116557 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
Zm00001d014507 GRMZM2G013663 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d041056 GRMZM2G352159 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0008285 negative regulation of cell proliferation IMP Arabidopsis.org
BP GO:0009737 response to abscisic acid IMP Arabidopsis.org
BP GO:0009911 positive regulation of flower development IMP Arabidopsis.org
BP GO:0010047 fruit dehiscence IMP Arabidopsis.org
BP GO:0010150 leaf senescence IMP Arabidopsis.org
BP GO:0010227 floral organ abscission IMP Arabidopsis.org
BP GO:0042744 hydrogen peroxide catabolic process RCA Arabidopsis.org
MF GO:0043565 sequence-specific DNA binding IDA Arabidopsis.org
BP GO:0045892 negative regulation of transcription, DNA-templated IMP Arabidopsis.org
BP GO:0045892 negative regulation of transcription, DNA-templated TAS Arabidopsis.org
BP GO:0048481 plant ovule development IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 290 372
IPR003340 B3_DNA-bd 164 265
IPR033389 AUX/IAA_dom 716 769
IPR033389 AUX/IAA_dom 779 818
No external refs found!