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  5. Nbi_g34788

Nbi_g34788


Description : component *(SPT6) of SPT6-IWS1 transcription elongation complex & original description: none


Gene families : OG0001807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g34788

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00136890 GTB1,... Chromatin organisation.histone chaperone... 0.03 OrthoFinder output from all 47 species
AT1G63210 No alias Transcription elongation factor Spt6 0.03 OrthoFinder output from all 47 species
Adi_g055496 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Adi_g060511 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Ala_g22952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14097 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aob_g17694 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001486.8 GTB1 Chromatin organisation.histone chaperone... 0.03 OrthoFinder output from all 47 species
Dde_g17217 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Len_g21328 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Lfl_g05758 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Mp2g25720.1 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.02 OrthoFinder output from all 47 species
Ppi_g60722 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0208.g025833 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Spa_g16432 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Tin_g02913 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Tin_g21814 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
InterPro domains Description Start Stop
IPR035420 Spt6_SH2 1136 1326
IPR032706 Spt6_HHH 802 904
IPR028231 Spt6_YqgF 647 798
IPR041692 HHH_9 918 1009
No external refs found!