AT5G60920 (COB)


Aliases : COB

Description : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family


Gene families : OG_01_0000796 (Gene family) Phylogenetic Tree(s): OG0000796_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G60920
Cluster HCCA cluster: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AT5G15630 IRX6, COBL4 COBRA-like extracellular glycosyl-phosphatidyl... 0.03 Gene family
GSVIVT01008128001 No alias 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.09 Gene family
GSVIVT01036565001 No alias 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.03 Gene family
LOC_Os03g30250 Os03g0416200,... 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.03 Gene family
LOC_Os05g32110 Os05g0386800 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.07 Gene family
MA_106654g0010 No alias 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.06 Gene family
MA_4056g0010 No alias 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.04 Gene family
MA_40967g0020 No alias 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.02 Gene family
MA_637485g0010 No alias 10.2.2 cell wall.cellulose synthesis.COBRA COBRA-like... 0.07 Gene family
Smo271954 PACid_15404645 10.2.2 cell wall.cellulose synthesis.COBRA COBRA-like... 0.07 Gene family
Solyc02g065770.3.1 Solyc02g065770.3 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.11 Gene family
Zm00001d013256 GRMZM2G071970 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.07 Gene family
Zm00001d022082 GRMZM2G167497 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.05 Gene family
Zm00001d034049 GRMZM5G826714 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.07 Gene family
Zm00001d047276 GRMZM2G109326 10.2.2 cell wall.cellulose synthesis.COBRA Encodes a... 0.05 Gene family

Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process RCA Arabidopsis.org
BP GO:0000272 polysaccharide catabolic process RCA Arabidopsis.org
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005886 plasma membrane IDA Arabidopsis.org
CC GO:0005886 plasma membrane ISM Arabidopsis.org
BP GO:0005982 starch metabolic process RCA Arabidopsis.org
BP GO:0006096 glycolytic process RCA Arabidopsis.org
BP GO:0006816 calcium ion transport RCA Arabidopsis.org
BP GO:0006833 water transport RCA Arabidopsis.org
BP GO:0006972 hyperosmotic response RCA Arabidopsis.org
BP GO:0007030 Golgi organization RCA Arabidopsis.org
BP GO:0007389 pattern specification process RCA Arabidopsis.org
BP GO:0008361 regulation of cell size RCA Arabidopsis.org
BP GO:0009266 response to temperature stimulus RCA Arabidopsis.org
CC GO:0009505 plant-type cell wall IDA Arabidopsis.org
BP GO:0009651 response to salt stress IMP Arabidopsis.org
BP GO:0009651 response to salt stress RCA Arabidopsis.org
BP GO:0009664 plant-type cell wall organization RCA Arabidopsis.org
BP GO:0009750 response to fructose RCA Arabidopsis.org
BP GO:0009825 multidimensional cell growth IMP Arabidopsis.org
BP GO:0009825 multidimensional cell growth RCA Arabidopsis.org
BP GO:0009832 plant-type cell wall biogenesis RCA Arabidopsis.org
CC GO:0009897 external side of plasma membrane ISS Arabidopsis.org
BP GO:0009926 auxin polar transport RCA Arabidopsis.org
CC GO:0009930 longitudinal side of cell surface IDA Arabidopsis.org
BP GO:0009932 cell tip growth RCA Arabidopsis.org
BP GO:0010015 root morphogenesis RCA Arabidopsis.org
BP GO:0010215 cellulose microfibril organization IMP Arabidopsis.org
BP GO:0010817 regulation of hormone levels RCA Arabidopsis.org
BP GO:0016049 cell growth RCA Arabidopsis.org
BP GO:0030243 cellulose metabolic process RCA Arabidopsis.org
CC GO:0031225 anchored component of membrane TAS Arabidopsis.org
BP GO:0040007 growth RCA Arabidopsis.org
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light RCA Arabidopsis.org
CC GO:0046658 anchored component of plasma membrane IDA Arabidopsis.org
BP GO:0046686 response to cadmium ion RCA Arabidopsis.org
BP GO:0048767 root hair elongation RCA Arabidopsis.org
BP GO:0071555 cell wall organization RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006918 COBRA_pln 60 223
No external refs found!