AT5G58420


Description : Ribosomal protein S4 (RPS4A) family protein


Gene families : OG_01_0003252 (Gene family) Phylogenetic Tree(s): OG0003252_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G58420
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021433.38 No alias No description available 0.19 Gene family
Cre06.g308250 No alias No description available 0.22 Gene family
GSVIVT01024668001 No alias No description available 0.28 Gene family
GSVIVT01032756001 No alias No description available 0.1 Gene family
LOC_Os01g25610 Os01g0358400 No description available 0.31 Gene family
LOC_Os02g01560 Os02g0105900 No description available 0.34 Gene family
LOC_Os05g30530 Os05g0368300 No description available 0.24 Gene family
MA_127596g0010 No alias No description available 0.17 Gene family
Smo148442 PACid_15407709 No description available 0.17 Gene family
Solyc06g007360.3.1 Solyc06g007360.3 No description available 0.21 Gene family
Zm00001d012878 GRMZM2G125271 No description available 0.31 Gene family
Zm00001d034790 GRMZM2G035017 No description available 0.33 Gene family

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 95 169
IPR032277 40S_S4_C 212 258
IPR013843 Ribosomal_S4e_N 3 39
IPR002942 S4_RNA-bd 44 90
IPR005824 KOW 177 210
No external refs found!