AT5G55720


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G55720
Cluster HCCA cluster: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT3G24670 No alias Pectin lyase-like superfamily protein 0.03 Gene family
GSVIVT01003984001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01011348001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01014682001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.07 Gene family
GSVIVT01028548001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os04g05050 Os04g0137201 10.6.3 cell wall.degradation.pectate lyases and... 0.06 Gene family
MA_10437227g0020 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_203992g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
MA_97947g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Smo407495 PACid_15419124 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc02g093580.3.1 Solyc02g093580.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc03g111690.3.1 Solyc03g111690.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Arabidopsis.org
MF GO:0016829 lyase activity ISS Arabidopsis.org
MF GO:0030570 pectate lyase activity ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 129 308
No external refs found!