AT5G54600


Description : Translation protein SH3-like family protein


Gene families : OG_01_0002513 (Gene family) Phylogenetic Tree(s): OG0002513_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G54600
Cluster HCCA cluster: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000455.16 No alias No description available 0.03 Gene family
Cre07.g330450 No alias 29.2.1.1.1.2.24 protein.synthesis.ribosomal... 0.01 Gene family
Cre16.g652550 No alias 29.2.1.1.1.2.24 protein.synthesis.ribosomal... 0.21 Gene family
GSVIVT01014572001 No alias 29.2.1.1.1.2.24 protein.synthesis.ribosomal... 0.11 Gene family
LOC_Os06g46930 Os06g0683200 29.2.1.1.1.2.24 protein.synthesis.ribosomal... 0.21 Gene family
LOC_Os11g04370 Os11g0139100 29.2.1.1.1.2.24 protein.synthesis.ribosomal... 0.02 Gene family
MA_10018366g0010 No alias No description available 0.07 Gene family
MA_9411466g0010 No alias 29.2.1.1.1.2.24 protein.synthesis.ribosomal... 0.05 Gene family
Smo230291 PACid_15412464 No description available 0.07 Gene family
Zm00001d014488 GRMZM2G463913 29.2.1.1.1.2.24 protein.synthesis.ribosomal... 0.33 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
CC GO:0009570 chloroplast stroma IDA Arabidopsis.org
CC GO:0009941 chloroplast envelope IDA Arabidopsis.org
CC GO:0015934 large ribosomal subunit ISS Arabidopsis.org
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Arabidopsis.org
BP GO:0032544 plastid translation IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003256 Ribosomal_L24 108 172
IPR005824 KOW 76 106
No external refs found!