AT5G53370 (ATPMEPCRF, PMEPCRF)


Aliases : ATPMEPCRF, PMEPCRF

Description : pectin methylesterase PCR fragment F


Gene families : OG_01_0000075 (Gene family) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G53370
Cluster HCCA cluster: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AT2G45220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Gene family
AT4G02320 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Gene family
GSVIVT01031667001 No alias 10.8.99 cell wall.pectin*esterases.misc pectin... 0.02 Gene family
LOC_Os04g38560 Os04g0458900 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family
LOC_Os08g34910 Os08g0449901,... 10.8.1 cell wall.pectin*esterases.PME Plant... 0.02 Gene family
Solyc03g083840.3.1 Solyc03g083840.3 10.8.99 cell wall.pectin*esterases.misc Plant... 0.02 Gene family
Solyc03g123620.4.1 Solyc03g123620.4 10.8.1 cell wall.pectin*esterases.PME encodes a pectin... 0.02 Gene family
Zm00001d005792 GRMZM2G060400 10.8.1 cell wall.pectin*esterases.PME Plant... 0.03 Gene family
Zm00001d020586 GRMZM2G137676 10.8.1 cell wall.pectin*esterases.PME Plant... 0.03 Gene family
Zm00001d025588 GRMZM2G125356 10.8.1 cell wall.pectin*esterases.PME Encodes a putative... 0.03 Gene family
Zm00001d032100 GRMZM2G043415 10.8.1 cell wall.pectin*esterases.PME Plant... 0.03 Gene family

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006612 protein targeting to membrane RCA Arabidopsis.org
BP GO:0006833 water transport RCA Arabidopsis.org
BP GO:0009651 response to salt stress RCA Arabidopsis.org
BP GO:0009750 response to fructose RCA Arabidopsis.org
BP GO:0009963 positive regulation of flavonoid biosynthetic process RCA Arabidopsis.org
BP GO:0010363 regulation of plant-type hypersensitive response RCA Arabidopsis.org
MF GO:0030599 pectinesterase activity ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 273 570
IPR006501 Pectinesterase_inhib_dom 74 223
No external refs found!