AT5G52650


Description : RNA binding Plectin/S10 domain-containing protein


Gene families : OG_01_0001887 (Gene family) Phylogenetic Tree(s): OG0001887_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G52650
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001164.5 No alias No description available 0.3 Gene family
Cre09.g411100 No alias 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.21 Gene family
GSVIVT01019409001 No alias 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.28 Gene family
GSVIVT01028854001 No alias 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.25 Gene family
LOC_Os01g73160 Os01g0962600 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.11 Gene family
LOC_Os04g35090 Os04g0430100 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.38 Gene family
MA_111018g0010 No alias 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.07 Gene family
MA_314020g0010 No alias 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.05 Gene family
Smo37555 PACid_15412990 No description available 0.27 Gene family
Solyc01g099670.3.1 Solyc01g099670.3 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.45 Gene family
Solyc12g096540.2.1 Solyc12g096540.2 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.39 Gene family
Zm00001d003672 GRMZM2G050925 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.2 Gene family
Zm00001d011816 GRMZM2G446960 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.39 Gene family
Zm00001d025413 GRMZM2G043737 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.4 Gene family
Zm00001d042023 GRMZM2G171484 29.2.1.2.1.10 protein.synthesis.ribosomal... 0.34 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005618 cell wall IDA Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0009664 plant-type cell wall organization RCA Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit ISS Arabidopsis.org
BP GO:0042545 cell wall modification RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005326 S10_plectin_N 3 94
No external refs found!