AT5G51300


Description : splicing factor-related


Gene families : OG_01_0002518 (Gene family) Phylogenetic Tree(s): OG0002518_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G51300
Cluster HCCA cluster: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001154.10 No alias 27.1.1 RNA.processing.splicing splicing factor-related 0.05 Gene family
Cre09.g386731 No alias 27.1.1 RNA.processing.splicing splicing factor-related 0.04 Gene family
GSVIVT01014212001 No alias 27.1.1 RNA.processing.splicing splicing factor-related 0.04 Gene family
MA_10432977g0010 No alias 27.1.1 RNA.processing.splicing splicing factor-related 0.04 Gene family
MA_11962g0020 No alias 27.1.1 RNA.processing.splicing splicing factor-related 0.03 Gene family
MA_15045g0010 No alias 27.1.1 RNA.processing.splicing splicing factor-related 0.02 Gene family
MA_57875g0010 No alias 27.1.1 RNA.processing.splicing splicing factor-related 0.03 Gene family
Zm00001d003984 GRMZM2G000980 27.1.1 RNA.processing.splicing splicing factor-related 0.09 Gene family

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0008380 RNA splicing NAS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 256 329
IPR000504 RRM_dom 482 551
IPR032570 SF1-HH 126 237
No external refs found!