AT5G50920 (HSP93-V, DCA1,...)


Aliases : HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1

Description : CLPC homologue 1


Gene families : OG_01_0000281 (Gene family) Phylogenetic Tree(s): OG0000281_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G50920
Cluster HCCA cluster: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001416.8 No alias 29.5.5 protein.degradation.serine protease Encodes a... 0.03 Gene family
Cpa|evm.model.tig00020563.86 No alias No description available 0.02 Gene family
Cre43.g760497 No alias No description available 0.02 Gene family
GSVIVT01008636001 No alias No description available 0.04 Gene family
LOC_Os04g32560 Os04g0397100 No description available 0.04 Gene family
LOC_Os12g12850 Os12g0230100 No description available 0.02 Gene family
MA_596288g0010 No alias No description available 0.05 Gene family
MA_8117g0010 No alias No description available 0.04 Gene family
Smo439163 PACid_15421719 No description available 0.02 Gene family
Solyc12g042060.2.1 Solyc12g042060.2 No description available 0.05 Gene family
Solyc12g042065.1.1 Solyc12g042065.1 No description available 0.05 Gene family
Zm00001d003847 GRMZM2G149567 29.5.5 protein.degradation.serine protease ATP-dependent... 0.03 Gene family
Zm00001d003894 GRMZM2G001084 No description available 0.03 Gene family
Zm00001d016664 GRMZM2G172230 29.5.5 protein.degradation.serine protease ATP-dependent... 0.04 Gene family
Zm00001d024009 GRMZM2G009443 No description available 0.04 Gene family
Zm00001d025273 GRMZM2G123922 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IDA Arabidopsis.org
MF GO:0005524 ATP binding ISS Arabidopsis.org
CC GO:0005618 cell wall IDA Arabidopsis.org
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
CC GO:0009532 plastid stroma IDA Arabidopsis.org
CC GO:0009535 chloroplast thylakoid membrane IDA Arabidopsis.org
CC GO:0009536 plastid IDA Arabidopsis.org
CC GO:0009570 chloroplast stroma IDA Arabidopsis.org
BP GO:0009658 chloroplast organization IMP Arabidopsis.org
CC GO:0009706 chloroplast inner membrane IDA Arabidopsis.org
BP GO:0009735 response to cytokinin IDA Arabidopsis.org
BP GO:0009902 chloroplast relocation RCA Arabidopsis.org
CC GO:0009941 chloroplast envelope IDA Arabidopsis.org
BP GO:0010027 thylakoid membrane organization RCA Arabidopsis.org
BP GO:0010304 PSII associated light-harvesting complex II catabolic process RCA Arabidopsis.org
BP GO:0010380 regulation of chlorophyll biosynthetic process IMP Arabidopsis.org
MF GO:0016887 ATPase activity ISS Arabidopsis.org
CC GO:0031897 Tic complex TAS Arabidopsis.org
BP GO:0034660 ncRNA metabolic process RCA Arabidopsis.org
BP GO:0042744 hydrogen peroxide catabolic process RCA Arabidopsis.org
BP GO:0042793 plastid transcription RCA Arabidopsis.org
BP GO:0045036 protein targeting to chloroplast IMP Arabidopsis.org
BP GO:0045037 protein import into chloroplast stroma IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 299 415
IPR019489 Clp_ATPase_C 817 897
IPR004176 Clp_N 185 236
IPR004176 Clp_N 109 161
IPR003959 ATPase_AAA_core 636 810
No external refs found!