AT5G48910 (LPA66)


Aliases : LPA66

Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G48910
Cluster HCCA cluster: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009789001 No alias No description available 0.04 Gene family
GSVIVT01032721001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01033190001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01033389001 No alias No description available 0.04 Gene family
LOC_Os04g39410 Os04g0469400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os06g30940 Os06g0506100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_122899g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20746g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_43615g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_7379g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
MA_86628g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_89214g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_9360929g0010 No alias No description available 0.05 Gene family
Smo181046 PACid_15413150 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Smo84657 PACid_15418630 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d035922 GRMZM2G102938,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d039193 GRMZM2G440349 No description available 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0007020 microtubule nucleation RCA Arabidopsis.org
BP GO:0009451 RNA modification IMP Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 512 636
IPR002885 Pentatricopeptide_repeat 413 437
IPR002885 Pentatricopeptide_repeat 480 508
IPR002885 Pentatricopeptide_repeat 339 386
IPR002885 Pentatricopeptide_repeat 238 281
No external refs found!