AT5G48900


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G48900
Cluster HCCA cluster: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT3G24670 No alias Pectin lyase-like superfamily protein 0.05 Gene family
AT5G04310 No alias Pectin lyase-like superfamily protein 0.02 Gene family
GSVIVT01000592001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01003984001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01007582001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01011348001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01028548001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01029048001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
LOC_Os06g05209 Os06g0144200 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os06g05260 Os06g0144900 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os10g31910 Os10g0457200 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_103716g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_10426822g0020 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
MA_10437227g0020 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
MA_203992g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_97947g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Smo407495 PACid_15419124 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc01g010740.3.1 Solyc01g010740.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc02g093580.3.1 Solyc02g093580.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc03g071570.3.1 Solyc03g071570.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc03g111690.3.1 Solyc03g111690.3 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc05g014000.3.1 Solyc05g014000.3 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc09g091430.3.1 Solyc09g091430.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0007389 pattern specification process RCA Arabidopsis.org
BP GO:0008361 regulation of cell size RCA Arabidopsis.org
BP GO:0009926 auxin polar transport RCA Arabidopsis.org
BP GO:0010015 root morphogenesis RCA Arabidopsis.org
MF GO:0016829 lyase activity ISS Arabidopsis.org
MF GO:0030570 pectate lyase activity ISS Arabidopsis.org
BP GO:0040007 growth RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 151 332
No external refs found!