AT5G48690


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).


Gene families : OG_01_0002550 (Gene family) Phylogenetic Tree(s): OG0002550_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G48690
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01003278001 No alias 29.5.11 protein.degradation.ubiquitin... 0.08 Gene family
LOC_Os08g41500 Os08g0526700 29.5.11 protein.degradation.ubiquitin... 0.08 Gene family
Zm00001d049805 GRMZM2G085836 29.5.11 protein.degradation.ubiquitin... 0.15 Gene family

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR018997 PUB_domain 225 291
No external refs found!