AT5G47460


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G47460
Cluster HCCA cluster: Cluster_214

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01007645001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01012461001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01015087001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
GSVIVT01017075001 No alias No description available 0.04 Gene family
GSVIVT01019408001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01020758001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01024912001 No alias No description available 0.04 Gene family
GSVIVT01028819001 No alias No description available 0.03 Gene family
GSVIVT01030054001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01033004001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01035837001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01036169001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01036511001 No alias No description available 0.03 Gene family
GSVIVT01037390001 No alias No description available 0.04 Gene family
LOC_Os01g01115 Os01g0101150 No description available 0.04 Gene family
LOC_Os03g11700 Os03g0216400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os03g16450 Os03g0271300 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os04g35650 Os04g0436800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os04g43430 Os04g0514500 No description available 0.03 Gene family
LOC_Os05g05490 Os05g0147600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
LOC_Os05g30710 Os05g0370000 No description available 0.03 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
LOC_Os08g40020 Os08g0511000 No description available 0.03 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.03 Gene family
LOC_Os12g01850 Os12g0109300 No description available 0.04 Gene family
LOC_Os12g06650 Os12g0163600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_100287g0010 No alias No description available 0.03 Gene family
MA_101084g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_10426261g0020 No alias No description available 0.04 Gene family
MA_10427342g0010 No alias No description available 0.03 Gene family
MA_105629g0010 No alias 35.1.27 not assigned.no ontology.tetratricopeptide... 0.07 Gene family
MA_1109g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_11454g0010 No alias No description available 0.03 Gene family
MA_135075g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_16226g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_16823g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_177435g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_17949g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_18383g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_185098g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_193080g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20599g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_20782g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20899g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_210823g0010 No alias No description available 0.03 Gene family
MA_27147g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_32723g0010 No alias No description available 0.04 Gene family
MA_38266g0010 No alias No description available 0.04 Gene family
MA_43615g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_4438g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_483636g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_501007g0010 No alias No description available 0.03 Gene family
MA_56322g0010 No alias No description available 0.03 Gene family
MA_75133g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_77437g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_77675g0010 No alias No description available 0.03 Gene family
MA_83898g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_86628g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_86739g0010 No alias No description available 0.07 Gene family
MA_8868720g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_9258g0010 No alias No description available 0.03 Gene family
Smo399 PACid_15419376 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc01g006920.3.1 Solyc01g006920.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc01g010510.3.1 Solyc01g010510.3 No description available 0.04 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.06 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Solyc03g063160.1.1 Solyc03g063160.1 No description available 0.04 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.07 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.06 Gene family
Solyc03g116000.1.1 Solyc03g116000.1 No description available 0.03 Gene family
Solyc04g063300.2.1 Solyc04g063300.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.07 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc05g012630.1.1 Solyc05g012630.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Solyc05g023900.1.1 Solyc05g023900.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc06g066080.1.1 Solyc06g066080.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.06 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.03 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc08g023640.1.1 Solyc08g023640.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc08g078570.2.1 Solyc08g078570.2 No description available 0.04 Gene family
Solyc09g007040.1.1 Solyc09g007040.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc09g009790.3.1 Solyc09g009790.3 No description available 0.03 Gene family
Solyc09g009950.3.1 Solyc09g009950.3 No description available 0.05 Gene family
Solyc09g010070.1.1 Solyc09g010070.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc09g065710.1.1 Solyc09g065710.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc11g005960.1.1 Solyc11g005960.1 No description available 0.04 Gene family
Solyc11g008970.1.1 Solyc11g008970.1 No description available 0.06 Gene family
Solyc11g067210.1.1 Solyc11g067210.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d022224 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d025463 GRMZM2G341216 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d028587 GRMZM5G836424 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d031535 GRMZM2G076257 No description available 0.07 Gene family
Zm00001d037891 No alias No description available 0.06 Gene family
Zm00001d038176 GRMZM2G141202 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 119 168
IPR002885 Pentatricopeptide_repeat 283 330
IPR002885 Pentatricopeptide_repeat 384 432
IPR002885 Pentatricopeptide_repeat 251 280
IPR002885 Pentatricopeptide_repeat 224 249
IPR002885 Pentatricopeptide_repeat 94 117
IPR002885 Pentatricopeptide_repeat 196 221
No external refs found!